PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030878.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 190aa    MW: 19789.9 Da    PI: 6.63
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030878.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.71.7e-5820115297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+kyre+egek
  CCG030878.2  20 KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEK 115
                  89********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5516126IPR009072Histone-fold
SuperFamilySSF471131.38E-4122125IPR009072Histone-fold
PfamPF008085.2E-282589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.2E-225371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.2E-227290No hitNo description
PRINTSPR006157.2E-2291109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MADSDNESGG HNAVSELSAK EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF  60
ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEEYVEP LKIYLQKYRE MEGEKSSMGR  120
PAGEKDGPGG GSGGSGAAGG GGGANSTGGG GGGFNGGGGQ GMYGGMMMMG HHHQGHVYGA  180
GGFHHQGNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4920110292Transcription factor HapC (Eurofung)
4g92_B1e-4920110292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011131.11e-137PREDICTED: nuclear transcription factor Y subunit B-3
SwissprotO233108e-75NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLB9IAU02e-93B9IAU0_POPTR; Uncharacterized protein
TrEMBLD7UAG53e-93D7UAG5_VITVI; Putative uncharacterized protein
STRINGVIT_19s0015g00440.t018e-93(Vitis vinifera)
STRINGPOPTR_0014s16580.16e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-75nuclear factor Y, subunit B3